Outreach

The Outreach section contains CEDAR documents of general community interest, and is updated regularly. Click on any of the section links—for example, Publications— to see full listings.

Last Updated: 
Jul 12 2017 - 10:29am
Title Description Release Date
Supporting Ontology-Based Standardization of Biomedical Metadata in the CEDAR Workbench (in press)

Conference paper for the 2017 International Conference on Biomedical Ontology (ICBO)

September, 2017
Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations (in press)

Conference paper for the American Medical Informatics Association (AMIA) 2017 Annual Symposium

November, 2017
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation

New version of ontology recommender suggests relevant ontologies for annotating biomedical text data by combining the strengths of its predecessor with a range of adjustments and new features that improve its reliability and usefulness.

June, 2017
Predicting Biomedical Metadata in CEDAR: a study of gene expression metadata in GEO

Journal article about CEDAR's novel metadata prediction framework, which learn associations from existing metadata and can be used to predict metadata values

June, 2017
Empowering Multi-Cohort Gene Expression Analysis to Increase Reproducibility

This scientific pipeline is a target application for the CEDAR Workbench.

December, 2016
Title Description Release Date
CEDAR-LINCS Metadata Demonstration 2017

Dr. Daniel Cooper of the LINCS-DCIC project shows the integration of LINCS-DCIC and CEDAR software to create a seamless metadata management framework.

August 2, 2017
Introductory Video for CEDAR

An introduction to the motivation and goals for the CEDAR system.

July 31, 2017
Dr. Daniel Cooper at BD2K-LINCS Data Science Symposium

Dr. Daniel Cooper's talk discusses how to leverage Big Data using FAIR data principles and CEDAR framework to enable simplification and streamlining of metadata submission workflow.

May 16, 2017
Marcos Martinez-Romero: CEDAR Presentation, June 2016 (in Spanish)

IV International Workshop in Medical Imaging and Integration of Clinical Data 2016.

20-21 June, 2016. A Coruña, Spain.

June 20, 2016
Dr. Mark Musen- Stanford Big Data Conference 2015

Dr. Mark Musen presents at the 2015 Big Data in Biomedicine Conference: Driving Innovation for a Healthier World. Dr. Musen introduces CEDAR to the community and discusses project plans.

May 21, 2015
Title Description Release Date
BioCADDIE Webinar by Dr. Mark Musen CEDAR: The challenge, the product, the future December 8, 2016
When the World Beats a Path to Your Door: Collaboration in the Era of Big Data Mark Musen's presentation slides from talk #1 at the BD2K AHM November 29, 2016
Use of Standard Common Data Elements (CDEs) in CEDAR Mark Musen's presentation slides from talk #2 at the BD2K AHM November 29, 2016
An Open Repository Model for Acquiring Knowledge about Scientific Experiments (Presentation) Presentation slides for EKAW 2016 on CEDAR system November 22, 2016
AMIA 2016 CEDAR Demonstration CEDAR live demonstration at AMIA 2016 November 15, 2016
Title Description Release Date
Finding and Reusing Biomedical Datasets using CEDAR Metadata Repository and Tools Debra's CEDAR Poster for Big Data in Biomedicine May 24, 2017
FAIR LINCS Metadata Powered by CEDAR Cloud-Based Templates and Services Daniel's CEDAR Poster for the BD2K-LINCS Data Science Symposium May 16, 2017
SAP – A CEDAR-based Pipeline for Semantic Annotation of Biomedical Metadata Ravi's CEDAR Poster for 10th International Biocuration Conference March 26, 2017
CEDAR's Predictive Data Entry: Easier and Faster Creation of High-Quality Metadata Marcos' CEDAR Poster for 10th International Biocuration Conference March 26, 2017
The MO-LD project, Enhancing the FAIRness of Yeast and other model organism data CEDAR MO-LD Poster for BD2K AHM November 29, 2016
The smartAPI initiative: making Web APIs FAIR CEDAR SmartAPI Poster for BD2K AHM November 29, 2016
FAIR LINCS Data and Metadata powered by the CEDAR Framework CEDAR LINCS Poster for BD2K AHM November 29, 2016
Title Description Release Date
CEDAR Template Model V1.1.0 CEDAR paper describing the template model, version 1.0 July 6, 2017
Context Aware Recommendation Engine for Metadata Submission Conference paper about authoring good metadata using context aware recommendation engine December 3, 2015
CEDAR Proposal Text CEDAR proposal to NIH BD2K program October 28, 2014