The Outreach section contains CEDAR documents of general community interest, and is updated regularly. Click on any of the section links—for example, Publications— to see full listings.
|Supporting Ontology-Based Standardization of Biomedical Metadata in the CEDAR Workbench (in press)||
Conference paper for the 2017 International Conference on Biomedical Ontology (ICBO)
|Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations (in press)||
Conference paper for the American Medical Informatics Association (AMIA) 2017 Annual Symposium
|NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation||
New version of ontology recommender suggests relevant ontologies for annotating biomedical text data by combining the strengths of its predecessor with a range of adjustments and new features that improve its reliability and usefulness.
|Predicting Biomedical Metadata in CEDAR: a study of gene expression metadata in GEO||
Journal article about CEDAR's novel metadata prediction framework, which learn associations from existing metadata and can be used to predict metadata values
|Empowering Multi-Cohort Gene Expression Analysis to Increase Reproducibility||
This scientific pipeline is a target application for the CEDAR Workbench.
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|CEDAR-LINCS Metadata Demonstration 2017||
Dr. Daniel Cooper of the LINCS-DCIC project shows the integration of LINCS-DCIC and CEDAR software to create a seamless metadata management framework.
|August 2, 2017|
|Introductory Video for CEDAR||
An introduction to the motivation and goals for the CEDAR system.
|July 31, 2017|
|Dr. Daniel Cooper at BD2K-LINCS Data Science Symposium||
Dr. Daniel Cooper's talk discusses how to leverage Big Data using FAIR data principles and CEDAR framework to enable simplification and streamlining of metadata submission workflow.
|May 16, 2017|
|Marcos Martinez-Romero: CEDAR Presentation, June 2016 (in Spanish)||
IV International Workshop in Medical Imaging and Integration of Clinical Data 2016.
20-21 June, 2016. A Coruña, Spain.
|June 20, 2016|
|Dr. Mark Musen- Stanford Big Data Conference 2015||
Dr. Mark Musen presents at the 2015 Big Data in Biomedicine Conference: Driving Innovation for a Healthier World. Dr. Musen introduces CEDAR to the community and discusses project plans.
|May 21, 2015|
|BioCADDIE Webinar by Dr. Mark Musen||CEDAR: The challenge, the product, the future||December 8, 2016|
|When the World Beats a Path to Your Door: Collaboration in the Era of Big Data||Mark Musen's presentation slides from talk #1 at the BD2K AHM||November 29, 2016|
|Use of Standard Common Data Elements (CDEs) in CEDAR||Mark Musen's presentation slides from talk #2 at the BD2K AHM||November 29, 2016|
|An Open Repository Model for Acquiring Knowledge about Scientific Experiments (Presentation)||Presentation slides for EKAW 2016 on CEDAR system||November 22, 2016|
|AMIA 2016 CEDAR Demonstration||CEDAR live demonstration at AMIA 2016||November 15, 2016|
|Finding and Reusing Biomedical Datasets using CEDAR Metadata Repository and Tools||Debra's CEDAR Poster for Big Data in Biomedicine||May 24, 2017|
|FAIR LINCS Metadata Powered by CEDAR Cloud-Based Templates and Services||Daniel's CEDAR Poster for the BD2K-LINCS Data Science Symposium||May 16, 2017|
|SAP – A CEDAR-based Pipeline for Semantic Annotation of Biomedical Metadata||Ravi's CEDAR Poster for 10th International Biocuration Conference||March 26, 2017|
|CEDAR's Predictive Data Entry: Easier and Faster Creation of High-Quality Metadata||Marcos' CEDAR Poster for 10th International Biocuration Conference||March 26, 2017|
|The MO-LD project, Enhancing the FAIRness of Yeast and other model organism data||CEDAR MO-LD Poster for BD2K AHM||November 29, 2016|
|The smartAPI initiative: making Web APIs FAIR||CEDAR SmartAPI Poster for BD2K AHM||November 29, 2016|
|FAIR LINCS Data and Metadata powered by the CEDAR Framework||CEDAR LINCS Poster for BD2K AHM||November 29, 2016|
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|CEDAR Template Model V1.1.0||CEDAR paper describing the template model, version 1.0||July 6, 2017|
|Context Aware Recommendation Engine for Metadata Submission||Conference paper about authoring good metadata using context aware recommendation engine||December 3, 2015|
|CEDAR Proposal Text||CEDAR proposal to NIH BD2K program||October 28, 2014|